IL_1QVF_062

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUUCGG*CUGU

Length

10 nucleotides

Bulged bases

1QVF|1|0|G|2033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1QVF_062 not in the Motif Atlas

Homologous match to IL_4V9F_062

Geometric discrepancy: 0.0327

The information below is about IL_4V9F_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

1QVF|1|0|A|1747
1QVF|1|0|U|1748
1QVF|1|0|U|1749
1QVF|1|0|C|1750
1QVF|1|0|G|1751
1QVF|1|0|G|1752
*
1QVF|1|0|C|2031
1QVF|1|0|U|2032
1QVF|1|0|G|2033
1QVF|1|0|U|2034

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain B

50S ribosomal protein L3P

Chain J

50S ribosomal protein L14P