IL_1QVF_065

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGCAAAU*ACUCGUACG

Length

16 nucleotides

Bulged bases

1QVF|1|0|A|1857, 1QVF|1|0|C|1872, 1QVF|1|0|C|1876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1QVF_065 not in the Motif Atlas

Homologous match to IL_4V9F_065

Geometric discrepancy: 0.0292

The information below is about IL_4V9F_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

1QVF|1|0|C|1854
1QVF|1|0|G|1855
1QVF|1|0|C|1856
1QVF|1|0|A|1857
1QVF|1|0|A|1858
1QVF|1|0|A|1859
1QVF|1|0|U|1860
*
1QVF|1|0|A|1869
1QVF|1|0|C|1870
1QVF|1|0|U|1871
1QVF|1|0|C|1872
1QVF|1|0|G|1873
1QVF|1|0|U|1874
1QVF|1|0|A|1875
1QVF|1|0|C|1876
1QVF|1|0|G|1877

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Y

L37Ae 50S ribosomal protein