IL_1QVF_090

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUAGUAC*GGAACU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1QVF_090 not in the Motif Atlas

Homologous match to IL_4V9F_092

Geometric discrepancy: 0.0349

The information below is about IL_4V9F_092

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

1QVF|1|0|A|2689
1QVF|1|0|U|2690
1QVF|1|0|A|2691
1QVF|1|0|G|2692
1QVF|1|0|U|2693
1QVF|1|0|A|2694
1QVF|1|0|C|2695
*
1QVF|1|0|G|2700
1QVF|1|0|G|2701
1QVF|1|0|A|2702
1QVF|1|0|A|2703
1QVF|1|0|C|2704
1QVF|1|0|U|2705

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain B

50S ribosomal protein L3P

Chain E

50S ribosomal protein L6P

Chain J

50S ribosomal protein L14P