IL_1QVG_004
3D structure
- PDB id
- 1QVG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GGGAG*CGAAGAAC
- Length
- 13 nucleotides
- Bulged bases
- 1QVG|1|0|A|96
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1QVG_004 not in the Motif Atlas
- Homologous match to IL_4V9F_004
- Geometric discrepancy: 0.0368
- The information below is about IL_4V9F_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_71972.1
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
1QVG|1|0|G|77
1QVG|1|0|G|78
1QVG|1|0|G|79
1QVG|1|0|A|80
1QVG|1|0|G|81
*
1QVG|1|0|C|93
1QVG|1|0|G|94
1QVG|1|0|A|95
1QVG|1|0|A|96
1QVG|1|0|G|97
1QVG|1|0|A|98
1QVG|1|0|A|99
1QVG|1|0|C|100
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain S
- 50S ribosomal protein L24P
- Chain U
- 50S ribosomal protein L29P
Coloring options: