IL_1QVG_020

3D structure

PDB id

1QVG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGACCG*CCAGUAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1QVG_020 not in the Motif Atlas

Homologous match to IL_4V9F_019

Geometric discrepancy: 0.0586

The information below is about IL_4V9F_019

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

1QVG|1|0|U|567
1QVG|1|0|G|568
1QVG|1|0|A|569
1QVG|1|0|C|570
1QVG|1|0|C|571
1QVG|1|0|G|572
*
1QVG|1|0|C|585
1QVG|1|0|C|586
1QVG|1|0|A|587
1QVG|1|0|G|588
1QVG|1|0|U|589
1QVG|1|0|A|590
1QVG|1|0|A|591

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain V

50S ribosomal protein L30P