3D structure

PDB id
1QVG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CCGAG*CGUUUGACG
Length
14 nucleotides
Bulged bases
1QVG|1|0|U|1029, 1QVG|1|0|U|1030
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1QVG_032 not in the Motif Atlas
Homologous match to IL_4V9F_031
Geometric discrepancy: 0.0341
The information below is about IL_4V9F_031
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_94910.1
Basepair signature
cWW-tSS-tSH-L-R-R-L-cWW-L
Number of instances in this motif group
3

Unit IDs

1QVG|1|0|C|936
1QVG|1|0|C|937
1QVG|1|0|G|938
1QVG|1|0|A|939
1QVG|1|0|G|940
*
1QVG|1|0|C|1026
1QVG|1|0|G|1027
1QVG|1|0|U|1028
1QVG|1|0|U|1029
1QVG|1|0|U|1030
1QVG|1|0|G|1031
1QVG|1|0|A|1032
1QVG|1|0|C|1033
1QVG|1|0|G|1034

Current chains

Chain 0
23S ribosomal rna

Nearby chains

Chain N
50S ribosomal protein L18e
Chain P
50S ribosomal protein L21e
Chain V
50S ribosomal protein L30P

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2722 s