3D structure

PDB id
1QVG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
UUAAGUG*CUCAAA
Length
13 nucleotides
Bulged bases
1QVG|1|0|C|1245, 1QVG|1|0|A|1247
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1QVG_041 not in the Motif Atlas
Homologous match to IL_4V9F_040
Geometric discrepancy: 0.1416
The information below is about IL_4V9F_040
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_57188.5
Basepair signature
cWW-tWW-L-tWW-cWW-cSH
Number of instances in this motif group
5

Unit IDs

1QVG|1|0|U|1115
1QVG|1|0|U|1116
1QVG|1|0|A|1117
1QVG|1|0|A|1118
1QVG|1|0|G|1119
1QVG|1|0|U|1120
1QVG|1|0|G|1121
*
1QVG|1|0|C|1243
1QVG|1|0|U|1244
1QVG|1|0|C|1245
1QVG|1|0|A|1246
1QVG|1|0|A|1247
1QVG|1|0|A|1248

Current chains

Chain 0
23S ribosomal rna

Nearby chains

Chain E
50S ribosomal protein L6P
Chain I
50S ribosomal protein L13P

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1003 s