IL_1QVG_057

3D structure

PDB id

1QVG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCAACU*ACGAACG

Length

13 nucleotides

Bulged bases

1QVG|1|0|C|1617

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1QVG_057 not in the Motif Atlas

Homologous match to IL_4V9F_057

Geometric discrepancy: 0.0456

The information below is about IL_4V9F_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34822.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

1QVG|1|0|C|1578
1QVG|1|0|C|1579
1QVG|1|0|A|1580
1QVG|1|0|A|1581
1QVG|1|0|C|1582
1QVG|1|0|U|1583
*
1QVG|1|0|A|1612
1QVG|1|0|C|1613
1QVG|1|0|G|1614
1QVG|1|0|A|1615
1QVG|1|0|A|1616
1QVG|1|0|C|1617
1QVG|1|0|G|1618

Current chains

Chain 0

23S ribosomal rna

Nearby chains