IL_1QVG_058
3D structure
- PDB id
- 1QVG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UGGAAG*CAGGAAG
- Length
- 13 nucleotides
- Bulged bases
- 1QVG|1|0|G|1604
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1QVG_058 not in the Motif Atlas
- Homologous match to IL_4V9F_058
- Geometric discrepancy: 0.0531
- The information below is about IL_4V9F_058
- Detailed Annotation
- Kink-turn
- Broad Annotation
- Kink-turn
- Motif group
- IL_32016.1
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
1QVG|1|0|U|1587
1QVG|1|0|G|1588
1QVG|1|0|G|1589
1QVG|1|0|A|1590
1QVG|1|0|A|1591
1QVG|1|0|G|1592
*
1QVG|1|0|C|1602
1QVG|1|0|A|1603
1QVG|1|0|G|1604
1QVG|1|0|G|1605
1QVG|1|0|A|1606
1QVG|1|0|A|1607
1QVG|1|0|G|1608
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain O
- 50S ribosomal protein L19E
- Chain Y
- L37Ae 50S ribosomal protein
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