IL_1QVG_071
3D structure
- PDB id
- 1QVG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGUAGUACCUUG*CUUG
- Length
- 16 nucleotides
- Bulged bases
- 1QVG|1|0|G|1979, 1QVG|1|0|U|1985, 1QVG|1|0|U|2004
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1QVG_071 not in the Motif Atlas
- Homologous match to IL_4V9F_071
- Geometric discrepancy: 0.0392
- The information below is about IL_4V9F_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
1QVG|1|0|C|1975
1QVG|1|0|G|1976
1QVG|1|0|U|1977
1QVG|1|0|A|1978
1QVG|1|0|G|1979
1QVG|1|0|U|1980
1QVG|1|0|A|1981
1QVG|1|0|C|1982
1QVG|1|0|C|1983
1QVG|1|0|U|1984
1QVG|1|0|U|1985
1QVG|1|0|G|1986
*
1QVG|1|0|C|2002
1QVG|1|0|U|2003
1QVG|1|0|U|2004
1QVG|1|0|G|2005
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain A
- 50S ribosomal protein L2P
Coloring options: