IL_1QVG_088

3D structure

PDB id

1QVG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

1QVG|1|0|A|2637

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1QVG_088 not in the Motif Atlas

Geometric match to IL_2VPL_002

Geometric discrepancy: 0.251

The information below is about IL_2VPL_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

1QVG|1|0|C|2626
1QVG|1|0|G|2627
*
1QVG|1|0|C|2636
1QVG|1|0|A|2637
1QVG|1|0|G|2638

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 4

Oligonucleotide CCA

Chain 5

Oligonucleotide CCA

Chain A

50S ribosomal protein L2P