IL_1QVG_107

3D structure

PDB id

1QVG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUGA*UACC

Length

8 nucleotides

Bulged bases

1QVG|1|0|G|1165

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1QVG_107 not in the Motif Atlas

Homologous match to IL_4V9F_110

Geometric discrepancy: 0.1177

The information below is about IL_4V9F_110

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

1QVG|1|0|G|1163
1QVG|1|0|U|1164
1QVG|1|0|G|1165
1QVG|1|0|A|1166
*
1QVG|1|0|U|1180
1QVG|1|0|A|1181
1QVG|1|0|C|1182
1QVG|1|0|C|1183

Current chains

Chain 0

23S ribosomal rna

Nearby chains