IL_1QWA_017

3D structure

PDB id

1QWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR structure of 5'-r(GGAUGCCUCCCGAGUGCAUCC): an RNA hairpin derived from the mouse 5'ETS that binds nucleolin RBD12.

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1QWA_017 not in the Motif Atlas

Geometric match to IL_4LFB_038

Geometric discrepancy: 0.3736

The information below is about IL_4LFB_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

68

Unit IDs

1QWA|17|A|C|6
1QWA|17|A|C|7
*
1QWA|17|A|G|14
1QWA|17|A|U|15
1QWA|17|A|G|16

Current chains

Chain A

18S ribosomal RNA, 5'ETS

Nearby chains