3D structure

PDB id
1RLG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Molecular basis of Box C/D RNA-protein interaction: co-crystal structure of the Archaeal sRNP intiation complex
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
C(5BU)C*GAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1RLG_001 not in the Motif Atlas
Geometric match to IL_6F4H_001
Geometric discrepancy: 0.1412
The information below is about IL_6F4H_001
Detailed Annotation
Isolated cWH basepair
Broad Annotation
No text annotation
Motif group
IL_70707.3
Basepair signature
cWW-cHW-cWW
Number of instances in this motif group
70

Unit IDs

1RLG|1|C|C|2
1RLG|1|C|5BU|3
1RLG|1|C|C|4
*
1RLG|1|C|G|22
1RLG|1|C|A|23
1RLG|1|C|G|24

Current chains

Chain C
25-MER

Nearby chains

Chain A
50S ribosomal protein L7Ae
Chain D
25-MER

Coloring options:


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