IL_1RLG_001

3D structure

PDB id

1RLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular basis of Box C/D RNA-protein interaction: co-crystal structure of the Archaeal sRNP intiation complex

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

C(5BU)C*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1RLG_001 not in the Motif Atlas

Geometric match to IL_6F4H_001

Geometric discrepancy: 0.1412

The information below is about IL_6F4H_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

1RLG|1|C|C|2
1RLG|1|C|5BU|3
1RLG|1|C|C|4
*
1RLG|1|C|G|22
1RLG|1|C|A|23
1RLG|1|C|G|24

Current chains

Chain C

25-MER

Nearby chains

Chain A

50S ribosomal protein L7Ae

Chain D

25-MER