IL_1RLG_002
3D structure
- PDB id
- 1RLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular basis of Box C/D RNA-protein interaction: co-crystal structure of the Archaeal sRNP intiation complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- C(5BU)GAC*GCGUGA(5BU)G
- Length
- 13 nucleotides
- Bulged bases
- 1RLG|1|C|U|18
- QA status
- Modified nucleotides: 5BU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1RLG_002 not in the Motif Atlas
- Geometric match to IL_3NVI_002
- Geometric discrepancy: 0.0879
- The information below is about IL_3NVI_002
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_69229.3
- Basepair signature
- cWW-L-tSH-L-tHS-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
1RLG|1|C|C|4
1RLG|1|C|5BU|5
1RLG|1|C|G|6
1RLG|1|C|A|7
1RLG|1|C|C|8
*
1RLG|1|C|G|15
1RLG|1|C|C|16
1RLG|1|C|G|17
1RLG|1|C|U|18
1RLG|1|C|G|19
1RLG|1|C|A|20
1RLG|1|C|5BU|21
1RLG|1|C|G|22
Current chains
- Chain C
- 25-MER
Nearby chains
- Chain A
- 50S ribosomal protein L7Ae
Coloring options: