IL_1RY1_002

3D structure

PDB id

1RY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the signal recognition particle interacting with the elongation-arrested ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

GUU*AUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1RY1_002 not in the Motif Atlas

Geometric match to IL_1MFQ_002

Geometric discrepancy: 0.0004

The information below is about IL_1MFQ_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

1RY1|1|A|G|120
1RY1|1|A|U|121
1RY1|1|A|U|122
*
1RY1|1|A|A|228
1RY1|1|A|U|229
1RY1|1|A|C|230

Current chains

Chain A

SRP S domain

Nearby chains