IL_71625.3

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3	break		4		5		6	1-6	2-5	3-4
1	IL_8GLP_196	8GLP	0.3984	0		S2	SSU rRNA	G	108	PSU	109	U	110	*	G	351	U	352	C	353	cWW	cwW	cWW
2	IL_8GLP_063	8GLP	0.3694	0	Isolated non-canonical cWW pair (H)	L5	LSU rRNA	A	1682	PSU	1683	A	1684	*	U	1671	U	1672	U	1673	cWW	cwW	cWW
3	IL_9DFE_083	9DFE	0.2277	0	Isolated non-canonical cWW pair	1A	LSU rRNA	C	2085	U	2086	G	2087	*	U	2232	U	2233	G	2234	cWW	cwW	cWW
4	IL_8B0X_145	8B0X	0.2000	0	Isolated non-canonical cWW pair (H)	a	LSU rRNA	C	2236	U	2237	G	2238	*	U	2089	U	2090	G	2091	cWW	cwW	cWW
5	IL_7A0S_078	7A0S	0.2204	0	Isolated non-canonical cWW pair	X	LSU rRNA	C	2068	U	2069	G	2070	*	U	2211	U	2212	G	2213	cWW	cwW	cWW
6	IL_8GLP_169	8GLP	0.2099	0		L5	LSU rRNA	G	4769	U	4770	C	4771	*	G	4863	U	4864	C	4865	cWW	cwW	cWW
7	IL_8P9A_413	8P9A	0.2448	0	Isolated non-canonical cWW pair	sR	SSU rRNA	A	799	U	800	G	801	*	U	748	U	749	U	750	cWW	cwW	cWW
8	IL_8CRE_429	8CRE	0.2127	0	Isolated non-canonical cWW pair	CM	SSU rRNA	A	783	U	784	G	785	*	U	733	U	734	U	735	cWW	cwW	cWW
9	IL_2O3X_004	2O3X	0.1959	0	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	28	U	29	C	30	*	G	19	U	20	C	21	cWW	cwW	cWW
10	IL_5ZEG_004	5ZEG	0.2368	0		B+A	RNA (23-mer)	G	28	U	29	C	30	*	G	19	U	20	C	21	cWW	cwW	cWW
11	IL_4P3U_012	4P3U	0.2124	0	Isolated non-canonical cWW pair	C+D	RNA (23-mer)	G	19	U	20	C	21	*	G	28	U	29	C	30	cWW	ncwW	cWW
12	IL_4P3U_007	4P3U	0.1664	0	Isolated non-canonical cWW pair	D+C	RNA (23-mer)	G	42	U	43	C	44	*	G	5	U	6	C	7	cWW	ncwW	cWW
13	IL_8P9A_350	8P9A	0.1897	0	Isolated non-canonical cWW pair	AR	LSU rRNA	A	3168	U	3169	A	3170	*	U	3280	U	3281	U	3282	cWW	cwW	cWW
14	IL_5B2P_001	5B2P	0.1237	0	Isolated non-canonical cWW pair	B	Guide RNA	U	24	U	25	C	26	*	G	48	U	49	A	50	cWW	cwW	cWW
15	IL_4KYY_001	4KYY	0.1105	0	Isolated non-canonical cWW pair	B+A	RNA 17-mer	A	11	U	12	C	13	*	G	5	U	6	U	7	cWW	cwW	cWW
16	IL_4K31_004	4K31	0.1072	0	Isolated non-canonical cWW pair	C+B	RNA (23-mer)	G	5	U	6	C	7	*	G	19	U	20	C	21	cWW	cwW	cWW
17	IL_4K31_001	4K31	0.1075	0	Isolated non-canonical cWW pair	B+C	RNA (23-mer)	G	5	U	6	C	7	*	G	19	U	20	C	21	cWW	cwW	cWW
18	IL_3BNR_012	3BNR	0.0751	0	Isolated non-canonical cWW pair	C+D	A site of human mitochondrial ribosome, chain one + A site of human mitochondrial ribosome, chain three	G	19	U	20	C	21	*	G	3	U	4	C	5	cWW	cwW	cWW
19	IL_3BNN_005	3BNN	0.0932	0	Isolated non-canonical cWW pair	C+D	A site of human ribosome	G	3	U	4	C	5	*	G	17	U	18	C	19	cWW	cwW	cWW
20	IL_3BNN_008	3BNN	0.0000	0	Isolated non-canonical cWW pair	C+D	A site of human ribosome	G	17	U	18	C	19	*	G	3	U	4	C	5	cWW	cwW	cWW
21	IL_2O3Y_004	2O3Y	0.0789	0	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	28	U	29	C	30	*	G	19	U	20	C	21	cWW	cwW	cWW
22	IL_4KYY_003	4KYY	0.0865	0	Isolated non-canonical cWW pair	A+B	RNA 17-mer	A	11	U	12	C	13	*	G	5	U	6	U	7	cWW	cwW	cWW
23	IL_2OE8_001	2OE8	0.0913	0	Isolated non-canonical cWW pair	B+A	RNA (17-mer)	G	1494	U	1495	C	1496	*	G	1405	U	1406	C	1407	cWW	cwW	cWW
24	IL_2OE5_001	2OE5	0.1084	0	Isolated non-canonical cWW pair	B+A	RNA (17-mer)	G	1494	U	1495	C	1496	*	G	1405	U	1406	C	1407	cWW	cwW	cWW
25	IL_5ZEG_001	5ZEG	0.0916	0		B+A	RNA (23-mer)	G	42	U	43	C	44	*	G	5	U	6	C	7	cWW	cwW	cWW
26	IL_2O3Y_001	2O3Y	0.0979	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	5	U	6	C	7	*	G	42	U	43	C	44	cWW	cwW	cWW
27	IL_5ZTM_002	5ZTM	0.1186	0	Isolated non-canonical cWW pair	C	non-coding mRNA sequence roX2	A	123	U	124	C	125	*	G	157	U	158	U	159	cWW	cwW	cWW
28	IL_3U4M_001	3U4M	0.1195	0	Isolated non-canonical cWW pair	B	LSU rRNA	A	2108	U	2109	G	2110	*	C	2179	U	2180	U	2181	cWW	cwW	cWW
29	IL_4JGN_001	4JGN	0.1186	0	Isolated non-canonical cWW pair	E	RNA (20-mer)	C	517\|\|\|\|4_555	U	518\|\|\|\|4_555	G	519\|\|\|\|4_555	*	C	505	U	506	G	507	cWW	cwW	cWW
30	IL_1MFQ_002	1MFQ	0.1069	0	Isolated non-canonical cWW pair	A	SRP RNA	A	228	U	229	C	230	*	G	120	U	121	U	122	cWW	cwW	cWW
31	IL_8OI5_115	8OI5	0.1425	0	Isolated non-canonical cWW pair (H)	1	LSU rRNA	A	2984	U	2985	U	2986	*	A	3012	U	3013	U	3014	cWW	cwW	cWW
32	IL_8P9A_343	8P9A	0.1394	0	Isolated non-canonical cWW pair	AR	LSU rRNA	A	3012	U	3013	U	3014	*	A	3040	U	3041	U	3042	cWW	cwW	cWW
33	IL_9AXU_108	9AXU	0.1195	0	Isolated non-canonical cWW pair (H)	2	LSU rRNA	A	3108	U	3109	U	3110	*	A	3136	U	3137	U	3138	cWW	cwW	cWW
34	IL_8GLP_316	8GLP	0.1125	0	Isolated non-canonical cWW pair (H)	L5	LSU rRNA	A2M	4590	U	4591	C	4592	*	OMG	4618	U	4619	OMU	4620	cWW	cwW	cWW
35	IL_4P3U_006	4P3U	0.1433	0	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	28	U	29	C	30	*	G	19	U	20	C	21	cWW	cwW	cWW
36	IL_9AXU_033	9AXU	0.1354	0	Isolated non-canonical cWW pair (H)	2	LSU rRNA	A	997	U	998	A	999	*	U	986	U	987	U	988	cWW	cwW	cWW
37	IL_8OI5_037	8OI5	0.1401	0	Isolated non-canonical cWW pair (H)	1	LSU rRNA	A	961	U	962	A	963	*	U	950	U	951	U	952	cWW	cwW	cWW
38	IL_8P9A_262	8P9A	0.1537	0	Isolated non-canonical cWW pair	AR	LSU rRNA	A	965	U	966	A	967	*	U	954	U	955	U	956	cWW	cwW	cWW
39	IL_4TS2_004	4TS2	0.1461	0	Isolated non-canonical cWW pair	Y+X	Spinach aptamer RNA, bimolecular construct	C	77	U	78	C	79	*	G	20	U	21	G	22	cWW	cwW	cWW
40	IL_5WTI_002	5WTI	0.1411	0	Isolated non-canonical cWW pair	B	RNA (123-MER)	G	10	U	11	C	12	*	G	18	U	19	C	20	cWW	cwW	cWW
41	IL_2O3V_001	2O3V	0.1340	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	5	U	6	C	7	*	G	42	U	43	C	44	cWW	cwW	cWW
42	IL_7XPL_001	7XPL	0.1360	0	Isolated non-canonical cWW pair	H+G	BMG3 RNA strand B	A	6	U	7	G	8	*	C	22	U	23	U	24	cWW	cwW	cWW
43	IL_3BNR_007	3BNR	0.1228	0	Isolated non-canonical cWW pair	C+D	A site of human mitochondrial ribosome, chain one + A site of human mitochondrial ribosome, chain three	G	5	U	6	C	7	*	G	17	U	18	C	19	cWW	cwW	cWW
44	IL_2ET8_004	2ET8	0.1734	0	Isolated non-canonical cWW pair	B+A	RNA (22-mer)	G	27	U	28	C	29	*	G	18	U	19	C	20	cWW	cwW	cWW
45	IL_7L0Z_001	7L0Z	0.1559	0	Isolated non-canonical cWW pair	G	RNA (69-MER)	G	10	U	11	G	12	*	C	58	U	59	C	60	cWW	cwW	cWW
46	IL_9EBV_001	9EBV	0.1339	0		A	azaaromatic riboswitch aptamer (yjdF RNA)	A	68	U	69	G	70	*	C	53	U	54	U	55	cWW	cwW	cWW
47	IL_8GLP_231	8GLP	0.1447	0	Isolated non-canonical cWW pair (H)	S2	SSU rRNA	U	805	U	806	G	807	*	C	856	U	857	A	858	cWW	cwW	cWW
48	IL_1U6B_005	1U6B	0.1865	0	Isolated non-canonical cWW pair	B	197-MER	A	117	U	118	G	119	*	C	100	U	101	U	102	cWW	cwW	cWW
49	IL_3BNT_001	3BNT	0.1625	0	Isolated non-canonical cWW pair	A	A site of human mitochondrial ribosome	G	4	U	5	C	6	*	G	18\|\|\|\|4_665	U	19\|\|\|\|4_665	C	20\|\|\|\|4_665	cWW	cwW	cWW
50	IL_2O3V_004	2O3V	0.1390	0	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	28	U	29	C	30	*	G	19	U	20	C	21	cWW	cwW	cWW
51	IL_9DID_001	9DID	0.1237	0	Isolated non-canonical cWW pair	A	frameshifting pseudoknot RNA	A	76	C	77	C	78	*	G	9	U	10	U	11	cWW	cWW	cWW
52	IL_8P9A_387	8P9A	0.1871	0	Isolated non-canonical cWW pair	sR	SSU rRNA	A	206	U	207	U	208	*	A	257	C	258	U	259	cWW	cWW	cWW
53	IL_8CRE_404	8CRE	0.1610	0	Isolated non-canonical cWW pair	CM	SSU rRNA	A	255	C	256	U	257	*	A	204	U	205	U	206	cWW	cWW	cWW
54	IL_4KNQ_001	4KNQ	0.1761	0	Isolated non-canonical cWW pair	B	RNA (20-mer)	C	216\|\|\|\|4_555	C	217\|\|\|\|4_555	G	218\|\|\|\|4_555	*	C	204	C	205	G	206	cWW	cWw	cWW
55	IL_4V9F_047	4V9F	0.1459	0	Isolated non-canonical cWW pair	0	LSU rRNA	G	1349	U	1350	G	1351	*	C	1303	U	1304	C	1305	cWW	cwW	cWW
56	IL_5T3K_002	5T3K	0.1694	0	Isolated non-canonical cWW pair	A+B	RNA (17-mer) + RNA (16-mer)	G	10	U	11	C	12	*	G	24	75B	25	C	26	cWW	cwW	cWW
57	IL_1T0E_002	1T0E	0.2170	0	Isolated non-canonical cWW pair	A+C	RNA (18-mer) + RNA (17-mer)	G	10\|\|A	U	11	C	12	*	G	14	U	15	C	16	cWW	cwW	cWW
58	IL_8FEQ_001	8FEQ	0.1763	0	Isolated non-canonical cWW pair	AAA	RNA 16mer with two separated s(2)U	G	4	SUR	5	A	6	*	U	11\|\|\|\|4_555	SUR	12\|\|\|\|4_555	C	13\|\|\|\|4_555	cWW	cwW	cWW
59	IL_1ZX7_006	1ZX7	0.1655	0	Isolated non-canonical cWW pair	E+F	RNA (15-mer) + RNA (14-mer)	G	10	U	11	C	12	*	G	24	U	25	C	26	cWW	cwW	cWW
60	IL_7QQP_007	7QQP	0.2219	0	Isolated non-canonical cWW pair	A+C	tracrRNA + AAVS1 off-target3 target strand	A	7	C	8	U	9	*	DA	12	DC	13	DT	14	cWW	ncWw	ncWW
61	IL_9DFE_013	9DFE	0.1637	0	Isolated non-canonical cWW pair	1A	LSU rRNA	C	564	C	565	U	566	*	A	575	U	576	G	577	cWW	cWW	cWW
62	IL_4WF9_017	4WF9	0.1420	0	Isolated non-canonical cWW pair	X	LSU rRNA	C	607	C	608	U	609	*	A	618	U	619	G	620	cWW	cWW	cWW
63	IL_8B0X_077	8B0X	0.1948	0	Isolated non-canonical cWW pair (H)	a	LSU rRNA	C	566	C	567	U	568	*	A	577	U	578	G	579	cWW	cWW	cWW
64	IL_7A0S_011	7A0S	0.2186	0	Isolated non-canonical cWW pair	X	LSU rRNA	C	573	C	574	U	575	*	A	584	U	585	G	586	cWW	cWW	cWW
65	IL_4WF9_018	4WF9	0.3211	0	Isolated non-canonical cWW pair	X	LSU rRNA	U	638	U	639	G	640	*	U	705	U	706	G	707	cWW		cWW
66	IL_8GLP_272	8GLP	0.2688	0		S2	SSU rRNA	G	1573	C	1574	G	1575	*	U	1560	A	1561	C	1562	cWW	cWW	cWW
67	IL_8CRE_464	8CRE	0.3289	0	Isolated non-canonical cWW pair	CM	SSU rRNA	C	1496	U	1497	G	1498	*	U	1483	U	1484	G	1485	cWW		cWW
68	IL_4KYY_002	4KYY	0.3372	0	Isolated non-canonical cWW pair	A+B	RNA 17-mer	U	8	U	9	G	10	*	U	8	U	9	G	10	cWW		cWW
69	IL_7A0S_107	7A0S	0.3253	0	Isolated non-canonical cWW pair	Y	5S rRNA	C	97	C	98	G	99	*	U	82	C	83	G	84	cWW	ncWB	cWW
70	IL_8CRE_473	8CRE	0.2585	0	Isolated non-canonical cWW pair	CM	SSU rRNA	U	1721	U	1722	G	1723	*	U	1652	U	1653	A	1654	cWW		ncWW
71	IL_8GLP_281	8GLP	0.2518	0	Isolated non-canonical cWW pair (H)	S2	SSU rRNA	U	1803	OMU	1804	G	1805	*	U	1729	U	1730	A	1731	cWW		cWW
72	IL_8P9A_245	8P9A	0.2245	0	Isolated non-canonical cWW pair	AR	LSU rRNA	A	628	U	629	A	630	*	U	429	U	430	U	431	cWW		cWW
73	IL_4Y1M_005	4Y1M	0.1843	0	Isolated non-canonical cWW pair	B	E. coli yybP-ykoY riboswitch	U	4	U	5	U	6	*	A	103	U	104	A	105	cWW	ncwW	cWW
74	IL_8P9A_459	8P9A	0.2976	0	Isolated non-canonical cWW pair	sR	SSU rRNA	U	1734	U	1735	G	1736	*	U	1665	U	1666	A	1667	cWW		cWW
75	IL_8QYX_170	8QYX	0.2281	0	Isolated non-canonical cWW pair (H)	B2	5S rRNA	C	95	U	96	G	97	*	U	79	U	80	G	81	cWW	cwW	cWW
76	IL_8P9A_415	8P9A	0.2885	1	Isolated non-canonical cWW pair	sR	SSU rRNA	A	850	U	851	C	852	*	G	819	U	821	U	822	cWW	cwW	cWW
77	IL_5B2P_002	5B2P	0.4885	1	Isolated non-canonical cWW pair	B	Guide RNA	C	44	U	45	C	46	*	G	28	U	30	G	31	cWW	cwW	cWW
78	IL_8P9A_471	8P9A	0.4906	2	Isolated non-canonical cWW pair	sR	SSU rRNA	G	1352	U	1353	G	1354	*	U	1369	U	1372	C	1373	cWW	cwW	ncWW
79	IL_8OI5_061	8OI5	0.4732	1	Isolated non-canonical cWW pair (H)	1	LSU rRNA	C	1406	U	1407	G	1408	*	U	1394	U	1396	G	1397	cWW	cwW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUC*GUC	24
CUG*UUG	5
AUA*UUU	5
AUC*GUU	4
AUG*CUU	4
CCU*AUG	4
AUU*AUU	3
AUG*UUU	2
GUG*CUC	2
UUG*UUG	2
UUG*UUA	2
GU*GUC	1
A(PSU)A*UUU	1
UUC*GUA	1
CUG*CUG	1
(A2M)UC*(OMG)U(OMU)	1
CUC*GUG	1
UUG*CUA	1
ACC*GUU	1
AUU*ACU	1
ACU*AUU	1
CCG*CCG	1
GUC*GC	1
G(SUR)A*U(SUR)C	1
ACU*ACT	1
GCG*UAC	1
CCG*UCG	1
U(OMU)G*UUA	1
UUU*AUA	1
AUC*GUUU	1
CUC*GUUG	1
GUG*UUAUC	1
CUG*UUUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
U*U	59
C*U	6
C*C	3
U*UU	3
(PSU)*U	2
U*C	1
U*(75B)	1
(SUR)*(SUR)	1
C*A	1
(OMU)*U	1
U*UAU	1

Release history

Release	4.4	4.5	4.6
Date	2025-12-03	2025-12-31	2026-01-28
Status	Updated, 1 parent	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_71625.3 Version IL_71625.3 of this group appears in releases 4.4 to 4.6 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_71625.3 Version IL_71625.3 of this group appears in releases 4.4 to 4.6

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Csv

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