IL_1RY1_004

3D structure

PDB id

1RY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the signal recognition particle interacting with the elongation-arrested ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

GACC*GACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1RY1_004 not in the Motif Atlas

Homologous match to IL_1MFQ_004

Geometric discrepancy: 0.0003

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

1RY1|1|A|G|138
1RY1|1|A|A|139
1RY1|1|A|C|140
1RY1|1|A|C|141
*
1RY1|1|A|G|156
1RY1|1|A|A|157
1RY1|1|A|C|158
1RY1|1|A|C|159

Current chains

Chain A

SRP S domain

Nearby chains

Chain B

SRP19