IL_1RY1_006

3D structure

PDB id

1RY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the signal recognition particle interacting with the elongation-arrested ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

UGAACCG*CAAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1RY1_006 not in the Motif Atlas

Homologous match to IL_1MFQ_006

Geometric discrepancy: 0.0003

The information below is about IL_1MFQ_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85652.1

Basepair signature

cWW-tSH-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

1RY1|1|A|U|181
1RY1|1|A|G|182
1RY1|1|A|A|183
1RY1|1|A|A|184
1RY1|1|A|C|185
1RY1|1|A|C|186
1RY1|1|A|G|187
*
1RY1|1|A|C|212
1RY1|1|A|A|213
1RY1|1|A|A|214
1RY1|1|A|A|215
1RY1|1|A|A|216

Current chains

Chain A

SRP S domain

Nearby chains

Chain W

SRP54M