IL_1RY1_007

3D structure

PDB id

1RY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the signal recognition particle interacting with the elongation-arrested ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

CCAGGU*GAGCAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1RY1_007 not in the Motif Atlas

Homologous match to IL_1MFQ_007

Geometric discrepancy: 0.0002

The information below is about IL_1MFQ_007

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_35186.2

Basepair signature

cWW-tSH-tHW-L-R-cWW-cWW

Number of instances in this motif group

6

Unit IDs

1RY1|1|A|C|190
1RY1|1|A|C|191
1RY1|1|A|A|192
1RY1|1|A|G|193
1RY1|1|A|G|194
1RY1|1|A|U|195
*
1RY1|1|A|G|204
1RY1|1|A|A|205
1RY1|1|A|G|206
1RY1|1|A|C|207
1RY1|1|A|A|208
1RY1|1|A|G|209

Current chains

Chain A

SRP S domain

Nearby chains

Chain B

SRP19

Chain S

signal sequence peptide

Chain W

SRP54M