IL_1S34_003

3D structure

PDB id

1S34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of residues 907-929 from Rous Sarcoma Virus

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1S34_003 not in the Motif Atlas

Geometric match to IL_4YAZ_008

Geometric discrepancy: 0.1912

The information below is about IL_4YAZ_008

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.4

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

1S34|3|A|G|912
1S34|3|A|U|913
1S34|3|A|G|914
*
1S34|3|A|C|923
1S34|3|A|C|924

Current chains

Chain A

5'-R(*GP*GP*GP*GP*AP*GP*UP*GP*GP*UP*UP*UP*GP*UP*AP*UP*CP*CP*UP*UP*CP*CP*C)-3'

Nearby chains