IL_1S34_013

3D structure

PDB id

1S34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of residues 907-929 from Rous Sarcoma Virus

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1S34_013 not in the Motif Atlas

Geometric match to IL_7TZS_003

Geometric discrepancy: 0.2732

The information below is about IL_7TZS_003

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_34520.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

68

Unit IDs

1S34|13|A|G|912
1S34|13|A|U|913
1S34|13|A|G|914
*
1S34|13|A|C|923
1S34|13|A|C|924

Current chains

Chain A

5'-R(*GP*GP*GP*GP*AP*GP*UP*GP*GP*UP*UP*UP*GP*UP*AP*UP*CP*CP*UP*UP*CP*CP*C)-3'

Nearby chains