IL_1SA9_002

3D structure

PDB id

1SA9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the RNA octamer GGCGAGCC

Experimental method

X-RAY DIFFRACTION

Resolution

2.86 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

1SA9|1|C|C|203
1SA9|1|C|G|204
1SA9|1|C|A|205
1SA9|1|C|G|206
*
1SA9|1|D|C|211
1SA9|1|D|G|212
1SA9|1|D|A|213
1SA9|1|D|G|214

Current chains

Chain C

5'-R(*GP*GP*CP*GP*AP*GP*CP*C)-3'

Chain D

5'-R(*GP*GP*CP*GP*AP*GP*CP*C)-3'

Nearby chains