IL_1SAQ_006

3D structure

PDB id

1SAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the RNA octamer GIC(GA)GCC

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCC*GIC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SAQ_006 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.13

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

1SAQ|1|C|G|206
1SAQ|1|C|C|207
1SAQ|1|C|C|208
*
1SAQ|1|D|G|209
1SAQ|1|D|I|210
1SAQ|1|D|C|211

Current chains

Chain C

5'-R(*GP*IP*CP*GP*AP*GP*CP*C)-3'

Chain D

5'-R(*GP*IP*CP*GP*AP*GP*CP*C)-3'

Nearby chains