IL_1SAQ_008

3D structure

PDB id

1SAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the RNA octamer GIC(GA)GCC

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SAQ_008 not in the Motif Atlas

Geometric match to IL_4ZNP_002

Geometric discrepancy: 0.3841

The information below is about IL_4ZNP_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

1SAQ|1|E|C|303
1SAQ|1|E|G|304
1SAQ|1|E|A|305
1SAQ|1|E|G|306
*
1SAQ|1|E|C|303||||4_655
1SAQ|1|E|G|304||||4_655
1SAQ|1|E|A|305||||4_655
1SAQ|1|E|G|306||||4_655

Current chains

Chain E

5'-R(*GP*IP*CP*GP*AP*GP*CP*C)-3'

Nearby chains

Chain A

5'-R(*GP*IP*CP*GP*AP*GP*CP*C)-3'

Chain B

5'-R(*GP*IP*CP*GP*AP*GP*CP*C)-3'