IL_1SJ3_001

3D structure

PDB id

1SJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hepatitis Delta Virus Gemonic Ribozyme Precursor, with Mg2+ Bound

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

CAUGGUCCCAG*CG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SJ3_001 not in the Motif Atlas

Geometric match to IL_4PR6_001

Geometric discrepancy: 0.2325

The information below is about IL_4PR6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93657.1

Basepair signature

cWW-L-cWW-L-L-R-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

1SJ3|1|R|C|107
1SJ3|1|R|A|108
1SJ3|1|R|U|109
1SJ3|1|R|G|110
1SJ3|1|R|G|111
1SJ3|1|R|U|112
1SJ3|1|R|C|113
1SJ3|1|R|C|114
1SJ3|1|R|C|115
1SJ3|1|R|A|116
1SJ3|1|R|G|117
*
1SJ3|1|R|C|130
1SJ3|1|R|G|131

Current chains

Chain R

precursor form of the Hepatitis Delta virus ribozyme

Nearby chains