IL_1SJ4_001
3D structure
- PDB id
- 1SJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of a C75U mutant Hepatitis Delta Virus ribozyme precursor, in Cu2+ solution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CAUGGUCCCAG*CG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1SJ4_001 not in the Motif Atlas
- Geometric match to IL_4PR6_001
- Geometric discrepancy: 0.2212
- The information below is about IL_4PR6_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15218.1
- Basepair signature
- cWW-L-cWW-L-L-R-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
1SJ4|1|R|C|107
1SJ4|1|R|A|108
1SJ4|1|R|U|109
1SJ4|1|R|G|110
1SJ4|1|R|G|111
1SJ4|1|R|U|112
1SJ4|1|R|C|113
1SJ4|1|R|C|114
1SJ4|1|R|C|115
1SJ4|1|R|A|116
1SJ4|1|R|G|117
*
1SJ4|1|R|C|130
1SJ4|1|R|G|131
Current chains
- Chain R
- precursor form of the Hepatitis Delta virus ribozyme
Nearby chains
No other chains within 10ÅColoring options: