IL_1SJ4_001

3D structure

PDB id

1SJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a C75U mutant Hepatitis Delta Virus ribozyme precursor, in Cu2+ solution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CAUGGUCCCAG*CG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SJ4_001 not in the Motif Atlas

Geometric match to IL_4PR6_001

Geometric discrepancy: 0.2212

The information below is about IL_4PR6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15218.1

Basepair signature

cWW-L-cWW-L-L-R-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

1SJ4|1|R|C|107
1SJ4|1|R|A|108
1SJ4|1|R|U|109
1SJ4|1|R|G|110
1SJ4|1|R|G|111
1SJ4|1|R|U|112
1SJ4|1|R|C|113
1SJ4|1|R|C|114
1SJ4|1|R|C|115
1SJ4|1|R|A|116
1SJ4|1|R|G|117
*
1SJ4|1|R|C|130
1SJ4|1|R|G|131

Current chains

Chain R

precursor form of the Hepatitis Delta virus ribozyme

Nearby chains