IL_1SM1_007
3D structure
- PDB id
- 1SM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.42 Å
Loop
- Sequence
- GGAACUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- 1SM1|1|0|G|182
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1SM1_007 not in the Motif Atlas
- Homologous match to IL_7A0S_006
- Geometric discrepancy: 0.3771
- The information below is about IL_7A0S_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
1SM1|1|0|G|165
1SM1|1|0|G|166
1SM1|1|0|A|167
1SM1|1|0|A|168
1SM1|1|0|C|169
1SM1|1|0|U|170
1SM1|1|0|G|171
*
1SM1|1|0|C|178
1SM1|1|0|U|179
1SM1|1|0|C|180
1SM1|1|0|A|181
1SM1|1|0|G|182
1SM1|1|0|U|183
1SM1|1|0|A|184
1SM1|1|0|C|185
Current chains
- Chain 0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain J
- 50S RIBOSOMAL PROTEIN L15
- Chain Y
- 50S RIBOSOMAL PROTEIN L31
Coloring options: