IL_1SM1_009

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

GUUAGUAG*CGAACCC

Length

15 nucleotides

Bulged bases

1SM1|1|0|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SM1_009 not in the Motif Atlas

Homologous match to IL_7A0S_007

Geometric discrepancy: 0.2678

The information below is about IL_7A0S_007

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

1SM1|1|0|G|215
1SM1|1|0|U|216
1SM1|1|0|U|217
1SM1|1|0|A|218
1SM1|1|0|G|219
1SM1|1|0|U|220
1SM1|1|0|A|221
1SM1|1|0|G|222
*
1SM1|1|0|C|230
1SM1|1|0|G|231
1SM1|1|0|A|232
1SM1|1|0|A|233
1SM1|1|0|C|234
1SM1|1|0|C|235
1SM1|1|0|C|236

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 3

50S RIBOSOMAL PROTEIN L35

Chain J

50S RIBOSOMAL PROTEIN L15