IL_1SM1_013

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SM1_013 not in the Motif Atlas

Geometric match to IL_7A0S_011

Geometric discrepancy: 0.1419

The information below is about IL_7A0S_011

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

1SM1|1|0|C|573
1SM1|1|0|C|574
1SM1|1|0|U|575
*
1SM1|1|0|A|584
1SM1|1|0|U|585
1SM1|1|0|G|586

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain J

50S RIBOSOMAL PROTEIN L15

Chain O

50S RIBOSOMAL PROTEIN L20

Chain P

50S RIBOSOMAL PROTEIN L21