IL_1SM1_015
3D structure
- PDB id
- 1SM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.42 Å
Loop
- Sequence
- CUG*CGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1SM1_015 not in the Motif Atlas
- Homologous match to IL_4WF9_018
- Geometric discrepancy: 0.4
- The information below is about IL_4WF9_018
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
1SM1|1|0|C|603
1SM1|1|0|U|604
1SM1|1|0|G|605
*
1SM1|1|0|C|675
1SM1|1|0|G|676
1SM1|1|0|G|677
Current chains
- Chain 0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 3
- 50S RIBOSOMAL PROTEIN L35
- Chain J
- 50S RIBOSOMAL PROTEIN L15
Coloring options: