IL_1SM1_019

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

1SM1|1|0|G|814, 1SM1|1|0|G|818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SM1_019 not in the Motif Atlas

Geometric match to IL_7A0S_015

Geometric discrepancy: 0.3704

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

1SM1|1|0|G|687
1SM1|1|0|A|688
1SM1|1|0|A|689
1SM1|1|0|A|690
1SM1|1|0|C|691
*
1SM1|1|0|G|812
1SM1|1|0|A|813
1SM1|1|0|G|814
1SM1|1|0|A|815
1SM1|1|0|U|816
1SM1|1|0|A|817
1SM1|1|0|G|818
1SM1|1|0|C|819

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L4

Chain J

50S RIBOSOMAL PROTEIN L15