IL_1SM1_034

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

GAGA*UUCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SM1_034 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2394

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

1SM1|1|0|G|963
1SM1|1|0|A|964
1SM1|1|0|G|965
1SM1|1|0|A|966
*
1SM1|1|0|U|973
1SM1|1|0|U|974
1SM1|1|0|C|975
1SM1|1|0|C|976

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain K

50S RIBOSOMAL PROTEIN L16