IL_1SM1_037

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

UCCCUAAA*UA

Length

10 nucleotides

Bulged bases

1SM1|1|0|U|1019

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SM1_037 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1582

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

1SM1|1|0|U|1015
1SM1|1|0|C|1016
1SM1|1|0|C|1017
1SM1|1|0|C|1018
1SM1|1|0|U|1019
1SM1|1|0|A|1020
1SM1|1|0|A|1021
1SM1|1|0|A|1022
*
1SM1|1|0|U|1161
1SM1|1|0|A|1162

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain H

50S RIBOSOMAL PROTEIN L13

Chain O

50S RIBOSOMAL PROTEIN L20