IL_1SM1_040

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

1SM1|1|0|U|1044

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SM1_040 not in the Motif Atlas

Geometric match to IL_4K31_002

Geometric discrepancy: 0.221

The information below is about IL_4K31_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

1SM1|1|0|G|1042
1SM1|1|0|A|1043
1SM1|1|0|U|1044
1SM1|1|0|G|1045
*
1SM1|1|0|C|1132
1SM1|1|0|G|1133
1SM1|1|0|C|1134

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 4

50S RIBOSOMAL PROTEIN L36

Chain E

50S RIBOSOMAL PROTEIN L6

Chain K

50S RIBOSOMAL PROTEIN L16