Motif IL_76400.1 Version IL_76400.1 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8GLP_187 | 8GLP | 0.5873 | 1 | Isolated non-canonical cWW pair (H) | L8 | 5.8S rRNA | U | 92 | C | 93 | A | 95 | * | U | 64 | A | 65 | A | 66 | cWW | ncWW | cWW |
| 2 | IL_8P9A_371 | 8P9A | 0.5395 | 1 | Isolated non-canonical cWW with bulges | AT | 5.8S rRNA | U | 93 | C | 94 | A | 96 | * | U | 64 | A | 65 | A | 66 | cWW | ncSW | cWW |
| 3 | IL_8OI5_141 | 8OI5 | 0.5075 | 1 | 4 | 5.8S rRNA | U | 93 | C | 94 | A | 96 | * | U | 64 | A | 65 | A | 66 | ncWW | ncWW | cWW | |
| 4 | IL_9AXU_133 | 9AXU | 0.5031 | 1 | Isolated non-canonical cWW pair (H) | 4 | 5.8S rRNA | U | 101 | C | 102 | A | 104 | * | U | 72 | A | 73 | A | 74 | ncWW | ncWW | cWW |
| 5 | IL_4RUM_001 | 4RUM | 0.2008 | 1 | Isolated non-canonical cWW pair | A | NiCo riboswitch | G | 13 | A | 14 | C | 16 | * | G | 88 | A | 89 | C | 90 | cWW | cwW | cWW |
| 6 | IL_9DFE_040 | 9DFE | 0.0945 | 1 | Isolated non-canonical cWW pair | 1A | LSU rRNA | G | 1031 | A | 1032 | G | 1034 | * | C | 1121 | G | 1122 | C | 1123 | cWW | cWW | cWW |
| 7 | IL_8B0X_102 | 8B0X | 0.0000 | 1 | Isolated non-canonical cWW pair (H) | a | LSU rRNA | G | 1033 | A | 1034 | G | 1036 | * | C | 1123 | G | 1124 | C | 1125 | cWW | cWW | cWW |
| 8 | IL_7A0S_038 | 7A0S | 0.1109 | 1 | Isolated non-canonical cWW pair | X | LSU rRNA | G | 1042 | A | 1043 | G | 1045 | * | C | 1132 | G | 1133 | C | 1134 | cWW | ncWW | cWW |
| 9 | IL_4WF9_041 | 4WF9 | 0.1122 | 1 | Isolated non-canonical cWW pair | X | LSU rRNA | G | 1075 | A | 1076 | G | 1078 | * | C | 1165 | G | 1166 | C | 1167 | cWW | ncWW | cWW |
| 10 | IL_4K31_003 | 4K31 | 0.1926 | 1 | Isolated non-canonical cWW pair | B+C | RNA (23-mer) | A | 16 | A | 17 | G | 19 | * | C | 7 | G | 8 | U | 9 | cWW | cWW | cWW |
| 11 | IL_4K31_002 | 4K31 | 0.1843 | 1 | Isolated non-canonical cWW pair | C+B | RNA (23-mer) | A | 16 | A | 17 | G | 19 | * | C | 7 | G | 8 | U | 9 | cWW | cWW | cWW |
| 12 | IL_6TFF_003 | 6TFF | 0.2635 | 1 | Isolated non-canonical cWW pair | A | nadA RNA | C | 34 | A | 35 | C | 37 | * | G | 23 | G | 24 | G | 25 | cWW | cWW | cWW |
| 13 | IL_7D7W_003 | 7D7W | 0.4033 | 1 | Isolated non-canonical cWW pair | A | nadA RNA | C | 34 | A | 35 | C | 37 | * | G | 23 | G | 24 | G | 25 | cWW | cWW | cWW |
| 14 | IL_7D7V_003 | 7D7V | 0.4065 | 1 | Isolated non-canonical cWW pair | A | nadA RNA | C | 41 | A | 42 | U | 44 | * | G | 22 | G | 23 | G | 24 | cWW | cWW | cWW |
| 15 | IL_8B0X_009 | 8B0X | 0.3497 | 1 | Isolated non-canonical cWW pair (H) | A | SSU rRNA | G | 128 | A | 129 | A | 131 | * | U | 231 | G | 232 | C | 233 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCGA*UAA | 4 |
| GAUG*CGC | 4 |
| AAAG*CGU | 2 |
| CAGC*GGG | 2 |
| GAGC*GAC | 1 |
| CAGU*GGG | 1 |
| GAAA*UGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CG*A | 4 |
| AU*G | 4 |
| AA*G | 3 |
| AG*G | 3 |
| AG*A | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated non-canonical cWW pair (9)
- Isolated non-canonical cWW pair (H) (4)
- (1)
- Isolated non-canonical cWW with bulges (1)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.37 | Max 0.79
Coloring options: