IL_1SM1_055

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

1SM1|1|0|G|1345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SM1_055 not in the Motif Atlas

Homologous match to IL_7A0S_047

Geometric discrepancy: 0.2499

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_83150.2

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

1SM1|1|0|G|1332
1SM1|1|0|G|1333
1SM1|1|0|A|1334
1SM1|1|0|A|1335
1SM1|1|0|G|1336
*
1SM1|1|0|C|1344
1SM1|1|0|G|1345
1SM1|1|0|C|1346

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain Q

50S RIBOSOMAL PROTEIN L22