IL_1SM1_073

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CGUAAC*GAAGAAG

Length

13 nucleotides

Bulged bases

1SM1|1|0|G|1716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SM1_073 not in the Motif Atlas

Geometric match to IL_4WF9_066

Geometric discrepancy: 0.3234

The information below is about IL_4WF9_066

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

1SM1|1|0|C|1703
1SM1|1|0|G|1704
1SM1|1|0|U|1705
1SM1|1|0|A|1706
1SM1|1|0|A|1707
1SM1|1|0|C|1708
*
1SM1|1|0|G|1713
1SM1|1|0|A|1714
1SM1|1|0|A|1715
1SM1|1|0|G|1716
1SM1|1|0|A|1717
1SM1|1|0|A|1718
1SM1|1|0|G|1719

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L2