IL_1SM1_087

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

1SM1|1|0|A|2418

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SM1_087 not in the Motif Atlas

Homologous match to IL_7RQB_081

Geometric discrepancy: 0.1827

The information below is about IL_7RQB_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

1SM1|1|0|G|2053
1SM1|1|0|A|2054
*
1SM1|1|0|U|2417
1SM1|1|0|A|2418
1SM1|1|0|C|2419
1SM1|1|0|C|2420

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 5

QUINUPRISTIN

Chain A

50S RIBOSOMAL PROTEIN L2