Motif IL_42622.4 Version IL_42622.4 of this group appears in releases 3.86 to 3.86

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5	1-2	1-5	2-5	3-4
1	IL_3IGI_005	3IGI	0.6681	2	Multiple bulged bases	A	Group IIC intron	U	234	G	236	U	238	*	G	128	G	129		cWW		cWW
2	IL_5TBW_094	5TBW	0.2818	1	Minor groove platform	1	LSU rRNA	U	2807	C	2809	C	2810	*	G	2412	A	2413	cSH	cWW		cWW
3	IL_7RQB_081	7RQB	0.2902	1	Minor groove platform	1A	LSU rRNA	U	2438	C	2440	C	2441	*	G	2070	A	2071	cSH	cWW		cWW
4	IL_4WF9_081	4WF9	0.2933	1	Minor groove platform	X	LSU rRNA	U	2465	C	2467	C	2468	*	G	2097	A	2098	cSH	cWW		cWW
5	IL_4V9F_075	4V9F	0.2852	1	Minor groove platform	0	LSU rRNA	U	2473	C	2475	C	2476	*	G	2111	A	2112	cSH	cWW		cWW
6	IL_5J7L_324	5J7L	0.2621	1	Minor groove platform	DA	LSU rRNA	U	2438	C	2440	U	2441	*	A	2070	A	2071	cSH	cWW		cWW
7	IL_7A0S_076	7A0S	0.3053	1	Minor groove platform	X	LSU rRNA	U	2417	C	2419	C	2420	*	G	2053	A	2054	cSH	cWW		cWW
8	IL_8C3A_099	8C3A	0.2061	1	Minor groove platform	1	LSU rRNA	U	2779	C	2781	C	2782	*	G	2390	A	2391	cSH	cWW		cWW
9	IL_7A0S_028	7A0S	0.1409	0	Minor groove platform	X	LSU rRNA	U	925	C	926	C	927	*	G	875	A	876	ncSH	cWW		cWW
10	IL_4V9F_034	4V9F	0.0718	0	Minor groove platform	0	LSU rRNA	U	1009	C	1010	C	1011	*	G	956	A	957	cSH	cWW		cWW
11	IL_7RQB_028	7RQB	0.0000	0	Minor groove platform	1A	LSU rRNA	U	913	C	914	C	915	*	G	862	A	863	cSH	cWW		cWW
12	IL_4WF9_032	4WF9	0.0924	0	Minor groove platform	X	LSU rRNA	U	958	C	959	C	960	*	G	907	A	908	cSH	cWW		cWW
13	IL_8C3A_017	8C3A	0.2215	1	Minor groove platform	1	LSU rRNA	C	439	U	440	G	442	*	C	487	G	488	cSH	cWW	tHS	cWW
14	IL_8C3A_451	8C3A	0.5799	0	Minor groove platform	CM	SSU rRNA	C	1445	A	1446	C	1447	*	G	1163	G	1164		cWW		cWW
15	IL_4V88_445	4V88	0.5750	0	Minor groove platform	A6	SSU rRNA	C	1459	A	1460	C	1461	*	G	1178	G	1179		cWW		cWW
16	IL_5J7L_042	5J7L	0.3397	0	Minor groove platform	AA	SSU rRNA	C	1226	A	1227	C	1228	*	G	953	G	954		cWW	ntHS	cWW
17	IL_4LFB_038	4LFB	0.2955	0	Minor groove platform	A	SSU rRNA	C	1226	A	1227	C	1228	*	G	953	G	954		cWW	ntHS	cWW
18	IL_1U6B_007	1U6B	0.4158	0	Minor groove platform	B	197-MER	G	128	A	129	G	130	*	C	177	C	178	cSH	cWW	tHS	cWW
19	IL_6DTD_003	6DTD	0.3755	0	Minor groove platform	C	RNA (37-MER)	G	22	A	23	A	24	*	U	15	C	16	cSH	cWW	tHS	cWW
20	IL_5ML7_009	5ML7	0.4075	0	Minor groove platform	B	23S ribosomal RNA	C	2177	A	2178	G	2179	*	C	2201	G	2202		cWW	tHS	cWW
21	IL_2QWY_009	2QWY	0.3249	0	Minor groove platform	C	SAM-II riboswitch	U	40	A	41	G	42	*	C	23	A	24		cWW	tHS	cWW
22	IL_5TBW_039	5TBW	0.3140	0	Minor groove platform	1	LSU rRNA	U	1050	U	1051	U	1052	*	A	997	A	998	ncSH	cWW	tHS	cWW
23	IL_8C3A_042	8C3A	0.3070	0	Minor groove platform	1	LSU rRNA	U	1046	U	1047	U	1048	*	A	993	A	994	ncSH	cWW	ntHS	cWW
24	IL_6DLR_003	6DLR	0.2653	0	Minor groove platform	A	Guanidine-I riboswitch	C	39	U	40	G	41	*	C	21	G	22	cSH	cWW	tHS	cWW
25	IL_7MLW_004	7MLW	0.3282	0	Minor groove platform	F	Guanidine-I riboswitch	C	45	U	46	G	47	*	C	16	G	17	ncSH	cWW	tHS	cWW
26	IL_5T83_003	5T83	0.3058	0	Minor groove platform	A	Guanidine-I riboswitch	C	36	U	37	G	38	*	C	21	G	22	ncSH	cWW	ntHS	cWW
27	IL_5J7L_247	5J7L	0.2581	0	Minor groove platform	DA	LSU rRNA	U	434	C	435	C	436	*	G	43	A	44	cSH	cWW		cWW
28	IL_7RQB_003	7RQB	0.4031	0	Minor groove platform	1A	LSU rRNA	U	434	C	435	C	436	*	G	42	A	43	cSH	cWW		cWW
29	IL_7A0S_003	7A0S	0.3932	0	Minor groove platform	X	LSU rRNA	U	447	C	448	C	449	*	G	42	A	43	cSH	cWW		cWW
30	IL_5J7L_064	5J7L	0.5085	0	Single bulged A	AA	SSU rRNA	U	1440	A	1441	G	1442	*	C	1460	G	1461		cWW		cWW
31	IL_7TZS_003	7TZS	0.3190	0	Minor groove platform related	X	TPP riboswitch (THI element)	C	23	C	24	U	25	*	A	35	G	36	ncSH	cWW		cWW
32	IL_3K0J_002	3K0J	0.3558	0	Minor groove platform related	E	RNA (87-MER)	C	18	C	19	U	20	*	A	35	G	36	ncSH	cWW		cWW
33	IL_3IWN_001	3IWN	0.3987	0	Minor groove platform	A	C-di-GMP riboswitch	G	89	A	90	U	91	*	A	2	C	3		ncWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UCC*GA	7
UACC*GA	6
CAC*GG	4
CUG*CG	3
UUU*AA	2
CCU*AG	2
UUGAU*GG	1
UACU*AA	1
CUUG*CG	1
GAG*CC	1
GAA*UC	1
CAG*CG	1
UAG*CA	1
UAG*CG	1
GAU*AC	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*	10
C*	9
AC*	7
U*	5
UGA*	1
UU*	1

Release history

Release	3.86
Date	2024-07-17
Status	Updated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Minor groove platform (29)
Minor groove platform related (2)
Multiple bulged bases (1)
Single bulged A (1)
Basepair signature: cWW-cSH-cWW
Heat map statistics: Min 0.06 | Avg 0.38 | Max 0.87

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