IL_1SM1_092

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

UUU*AAA

Length

6 nucleotides

Bulged bases

1SM1|1|0|A|2168

QA status

Self-complementary: UUU,AAA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SM1_092 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.265

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

1SM1|1|0|U|2086
1SM1|1|0|U|2087
1SM1|1|0|U|2088
*
1SM1|1|0|A|2167
1SM1|1|0|A|2168
1SM1|1|0|A|2169

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain F

50S RIBOSOMAL PROTEIN L9