IL_1SM1_104

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

1SM1|1|0|G|2555, 1SM1|1|0|A|2556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SM1_104 not in the Motif Atlas

Homologous match to IL_9DFE_097

Geometric discrepancy: 0.2425

The information below is about IL_9DFE_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

1SM1|1|0|C|2489
1SM1|1|0|U|2490
1SM1|1|0|C|2491
*
1SM1|1|0|G|2553
1SM1|1|0|C|2554
1SM1|1|0|G|2555
1SM1|1|0|A|2556
1SM1|1|0|G|2557

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3

Chain Z

50S RIBOSOMAL PROTEIN L32