RNA 3D Hub //

Motif IL_68118.3 Version IL_68118.3 of this group appears in releases 4.2 to 4.2

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3break 4 5 61-62-42-53-4
1 IL_5D0B_0015D0B0.28560Isolated non-canonical cWW pairFRNA (17-mer)A31C32U33*A37A38U39cWWcWWcWW
2 IL_8B0X_0498B0X0.23400A SSU rRNAG1061U1062C1063*G1193U1194C1195cWWcwWcWW
3 IL_4LFB_0474LFB0.18800Isolated non-canonical cWW pairA SSU rRNAG1061U1062C1063*G1193U1194C1195cWWcwWcWW
4 IL_6E7L_0016E7L0.21160Isolated non-canonical cWW pairARNA (22-mer)C4U5G6*C17||||7_375U18||||7_375G19||||7_375cWWncWWcwWcWW
5 IL_5MWI_0015MWI0.17830Isolated non-canonical cWW pairARNA G(CUG)8C duplexC23||||4_555U24||||4_555G25||||4_555*C2U3G4cWWcwWcWW
6 IL_3LOA_0023LOA0.21460Isolated non-canonical cWW pairB+ARNA (23-mer)G1494U1495C1496*G14055BU1406C1407cWWcwWcWW
7 IL_5VCI_0015VCI0.18620Isolated non-canonical cWW pairB+ARNA (12-mer)C10U11G12*C1U2G3cWWcwWcWW
8 IL_4PCJ_0014PCJ0.17190Isolated non-canonical cWW pairAtrCUG-3('5)C33U34G35*C1U2G3cWWcwWcWW
9 IL_4KZD_0034KZD0.14810Isolated non-canonical cWW pairRRNA (84-MER)G17U18G19*C66U67C68cWWcwWcWW
10 IL_3RG5_0023RG50.00000Isolated non-canonical cWW pairBSelenocysteine transfer RNAA5|||BU6G7*C66U67U67|||AcWWcwWcWW
11 IL_1MZP_0011MZP0.12970Isolated non-canonical cWW pairBfragment of 23S rRNAA4U5G6*C50U51U52cWWcwWcWW
12 IL_8G9Z_0018G9Z0.13490Isolated non-canonical cWW pairESelenocysteine transfer RNAA5||A|BU6||AG7||A*C66||AU67||AU67||A|AcWWcwWcWW
13 IL_7QQX_0047QQX0.15600Isolated non-canonical cWW pairC+AFANCF off-target5 target strandDA11DT12DG13*C8U9U10cWWcWW
14 IL_4PCJ_0024PCJ0.28180Isolated non-canonical cWW pairAtrCUG-3('5)C4PSU5G6*C30U31G32cWWcWW
15 IL_9D9P_0019D9P0.29830REnterovirus 5' cloverleaf cis-acting replication elementU19U20G21*C25C26A27cWWncWWcWW
16 IL_7A0S_1127A0S0.56311Isolated non-canonical cWW with bulgesY 5S rRNAG66C67G69*C19A20C21ncWWncWWncWW
17 IL_4V9F_0974V9F0.40201Isolated non-canonical cWW with bulges0 LSU rRNAG2900C2901C2903*G2855A2856C2857cWWncWWcWW
18 IL_5ML7_0105ML70.40831Isolated non-canonical cWW with bulgesB23S ribosomal RNAG2196C2197A2199*U2181A2182C2183cWWcWWcWW
19 IL_4PKD_0014PKD0.35251Isolated non-canonical cWW with bulgesVU1 snRNA stem-loops 1 and 2 (55-MER)A86U87C89*G106U107U108cWWcwWcWW
20 IL_4WF9_0954WF90.39332Isolated non-canonical cWW with bulgesX LSU rRNAG2601C2602G2605*C2537U2538C2539cWWncWWcWW
21 IL_8B0X_1558B0X0.40712a LSU rRNAG2578C2579G2582*C2514U2515C2516cWWncWWcWW
22 IL_9DFE_0979DFE0.39652Isolated non-canonical cWW with bulges1A LSU rRNAG2574C2575G2578*C2510U2511C2512cWWncWWcWW
23 IL_7A0S_0897A0S0.42172Isolated non-canonical cWW with bulgesX LSU rRNAG2553C2554G2557*C2489U2490C2491cWWcWW
24 IL_9E6Q_0899E6Q0.39702Isolated non-canonical cWW with bulges (H)1 LSU rRNAG2688U2689G2692*OMC2624PSU2625C2626cWWcwWcWW
25 IL_9AXU_0999AXU0.42772Isolated non-canonical cWW with bulges (H)2 LSU rRNAG3038U3039G3042*C2974U2975C2976cWWcwWcWW
26 IL_8OI5_1088OI50.416221 LSU rRNAG2915U2916G2919*C2851U2852C2853cWWcwWcWW
27 IL_8P9A_3358P9A0.42052Isolated non-canonical cWW with bulgesAR LSU rRNAG2943U2944G2947*C2879U2880C2881cWWcwWcWW
28 IL_4V9F_0874V9F0.50002Isolated non-canonical cWW with bulges0 LSU rRNAG2609U2610G2613*U2545U2546C2547cWWcwWcWW
29 IL_8GLP_3148GLP0.75112L5 LSU rRNAG4520PSU4521G4524*OMC4456PSU4457C4458cWWcwWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUG*CUG4
GCGAG*CUC4
AUG*CUU3
GUGAG*CUC3
GUC*GUC2
ACU*AAU1
GUC*G(5BU)C1
GUG*CUC1
ATG*CUU1
CG*CUG1
UUG*CCA1
GCAG*CAC1
GCAC*GAC1
GCCA*UAC1
AUAC*GUU1
GUG(A2M)G*(OMC)(PSU)C1
GUGAG*UUC1
G(PSU)G(A2M)G*(OMC)(PSU)C1
Non-Watson-Crick part of the motif
SequenceCounts
U*U10
CGA*U4
UGA*U4
CA*A2
C*A1
U*(5BU)1
T*U1
(PSU)*U1
U*C1
CC*A1
UA*U1
UG(A2M)*(PSU)1
(PSU)G(A2M)*(PSU)1

Release history

Release4.2
Date2025-10-08
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated non-canonical cWW pair (13)
  • Isolated non-canonical cWW with bulges (9)
  • (5)
  • Isolated non-canonical cWW with bulges (H) (2)
    • Basepair signature
    cWW-cWW-cWW
    Heat map statistics
    Min 0.07 | Avg 0.38 | Max 0.87
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 1.0033 s