IL_1SM1_110

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

1SM1|1|0|G|2757, 1SM1|1|0|A|2761

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SM1_110 not in the Motif Atlas

Homologous match to IL_4WF9_099

Geometric discrepancy: 0.5673

The information below is about IL_4WF9_099

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

1SM1|1|0|U|2615
1SM1|1|0|U|2616
1SM1|1|0|G|2617
1SM1|1|0|A|2618
1SM1|1|0|G|2619
*
1SM1|1|0|C|2754
1SM1|1|0|A|2755
1SM1|1|0|A|2756
1SM1|1|0|G|2757
1SM1|1|0|A|2758
1SM1|1|0|U|2759
1SM1|1|0|G|2760
1SM1|1|0|A|2761
1SM1|1|0|G|2762

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3

Chain H

50S RIBOSOMAL PROTEIN L13