IL_1SM1_112

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SM1_112 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.2796

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

1SM1|1|0|C|2631
1SM1|1|0|U|2632
1SM1|1|0|A|2633
1SM1|1|0|G|2634
1SM1|1|0|U|2635
1SM1|1|0|A|2636
1SM1|1|0|C|2637
*
1SM1|1|0|G|2642
1SM1|1|0|G|2643
1SM1|1|0|A|2644
1SM1|1|0|C|2645
1SM1|1|0|C|2646
1SM1|1|0|G|2647

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain E

50S RIBOSOMAL PROTEIN L6

Chain I

50S RIBOSOMAL PROTEIN L14