IL_1SM1_144
3D structure
- PDB id
- 1SM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.42 Å
Loop
- Sequence
- CUCG*CCGG
- Length
- 8 nucleotides
- Bulged bases
- 1SM1|1|9|C|83
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1SM1_144 not in the Motif Atlas
- Geometric match to IL_5EW4_001
- Geometric discrepancy: 0.3146
- The information below is about IL_5EW4_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_43644.1
- Basepair signature
- cWW-cWW-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
1SM1|1|9|C|81
1SM1|1|9|U|82
1SM1|1|9|C|83
1SM1|1|9|G|84
*
1SM1|1|9|C|97
1SM1|1|9|C|98
1SM1|1|9|G|99
1SM1|1|9|G|100
Current chains
- Chain 9
- 5S RIBOSOMAL RNA
Nearby chains
- Chain 0
- Large subunit ribosomal RNA; LSU rRNA
- Chain K
- 50S RIBOSOMAL PROTEIN L16
- Chain T
- GENERAL STRESS PROTEIN CTC
- Chain X
- 50S RIBOSOMAL PROTEIN L30
Coloring options: