IL_1SM1_152

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

UAC*GACG

Length

7 nucleotides

Bulged bases

1SM1|1|0|C|1575

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SM1_152 not in the Motif Atlas

Homologous match to IL_7A0S_052

Geometric discrepancy: 0.3802

The information below is about IL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38565.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

12

Unit IDs

1SM1|1|0|U|1447
1SM1|1|0|A|1448
1SM1|1|0|C|1449
*
1SM1|1|0|G|1573
1SM1|1|0|A|1574
1SM1|1|0|C|1575
1SM1|1|0|G|1576

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains