IL_1SM1_156

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CU*ACAUG

Length

7 nucleotides

Bulged bases

1SM1|1|0|C|2691, 1SM1|1|0|A|2692, 1SM1|1|0|U|2693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SM1_156 not in the Motif Atlas

Homologous match to IL_7A0S_097

Geometric discrepancy: 0.3777

The information below is about IL_7A0S_097

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

1SM1|1|0|C|2674
1SM1|1|0|U|2675
*
1SM1|1|0|A|2690
1SM1|1|0|C|2691
1SM1|1|0|A|2692
1SM1|1|0|U|2693
1SM1|1|0|G|2694

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain L

50S RIBOSOMAL PROTEIN L17