IL_1SM1_157

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

UGCACG*UUCAG

Length

11 nucleotides

Bulged bases

1SM1|1|0|C|2842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SM1_157 not in the Motif Atlas

Homologous match to IL_4WF9_108

Geometric discrepancy: 0.4394

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.1

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

8

Unit IDs

1SM1|1|0|U|2822
1SM1|1|0|G|2823
1SM1|1|0|C|2824
1SM1|1|0|A|2825
1SM1|1|0|C|2826
1SM1|1|0|G|2827
*
1SM1|1|0|U|2840
1SM1|1|0|U|2841
1SM1|1|0|C|2842
1SM1|1|0|A|2843
1SM1|1|0|G|2844

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain L

50S RIBOSOMAL PROTEIN L17

Chain N

50S RIBOSOMAL PROTEIN L19