IL_1SYZ_005

3D structure

PDB id

1SYZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of the S. Cerevisiae U6 intramolecular stem loop (ISL) RNA at pH 5.7

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CCC*GAUG

Length

7 nucleotides

Bulged bases

1SYZ|5|A|U|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SYZ_005 not in the Motif Atlas

Geometric match to IL_5F5F_001

Geometric discrepancy: 0.3171

The information below is about IL_5F5F_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

61

Unit IDs

1SYZ|5|A|C|5
1SYZ|5|A|C|6
1SYZ|5|A|C|7
*
1SYZ|5|A|G|17
1SYZ|5|A|A|18
1SYZ|5|A|U|19
1SYZ|5|A|G|20

Current chains

Chain A

U6 INTRAMOLECULAR STEM-LOOP RNA

Nearby chains